2009 Summit on Translational Bioinformatics

March 15, 2009 - March 17, 2009
Grand Hyatt San Francisco
San Francisco, CA

Table of Contents

• Integrating Clinical Data into the i2b2 Repository Abend, Aaron Integrating Clinical Data into the i2b2 Repository
  Year: 2009
  Authors: Abend, Aaron
  Authors: Aaron Abend
  Manuscript Type: Paper
  Page: 1
  Conference Title: TBI
• Automatically Classifying Sentences in Full-Text Biomedical Articles into Introduction, Methods, Results and Discussions Agarwal, Shashank Automatically Classifying Sentences in Full-Text Biomedical Articles into Introduction, Methods, Results and Discussions
  Year: 2009
  Authors: Agarwal, Shashank
  Authors: Shashank Agarwal
  Manuscript Type: Paper
  Page: 6
  Conference Title: TBI
• Artificial Neural Networks in Prediction of Secondary Protein Structure Using CB513 Database Avdagic, Zikrija Artificial Neural Networks in Prediction of Secondary Protein Structure Using CB513 Database
  Year: 2009
  Authors: Avdagic, Zikrija
  Authors: Zikrija Avdagic
  Manuscript Type: Paper
  Page: 11
  Conference Title: TBI
• Comparing Concept Recognizers for Ontology-Based Indexing: MGREP vs. MetaMap * Bhatia, Nipun Comparing Concept Recognizers for Ontology-Based Indexing: MGREP vs. MetaMap *
  Year: 2009
  Authors: Bhatia, Nipun
  Authors: Nipun Bhatia
  Manuscript Type: Paper
  Page: 12
  Conference Title: TBI
• Network Analysis of Genes Regulated in Renal Diseases: Implications for a Molecular-Based Classification * Bhavnani, Suresh Network Analysis of Genes Regulated in Renal Diseases: Implications for a Molecular-Based Classification *
  Year: 2009
  Authors: Bhavnani, Suresh
  Authors: Suresh Bhavnani
  Manuscript Type: Paper
  Page: 13
  Conference Title: TBI
• Development of an Agile Knowledge Engineering Framework in Support of Multi-Disciplinary Translational Research Borlawsky, Tara Development of an Agile Knowledge Engineering Framework in Support of Multi-Disciplinary Translational Research
  Year: 2009
  Authors: Borlawsky, Tara
  Authors: Tara Borlawsky
  Manuscript Type: Paper
  Page: 14
  Conference Title: TBI
• Evaluation of cardiovascular risk assessment models with respect to the clinical interpretation of atherosclerosis in a different type II diabetes cohort CHAN, Lawrence Evaluation of cardiovascular risk assessment models with respect to the clinical interpretation of atherosclerosis in a different type II diabetes cohort
  Year: 2009
  Authors: CHAN, Lawrence
  Authors: Lawrence CHAN
  Manuscript Type: Paper
  Page: 19
  Conference Title: TBI
• Transcriptional Diagnosis by Bayesian Networks * Chang, Hsun-Hsien Transcriptional Diagnosis by Bayesian Networks *
  Year: 2009
  Authors: Chang, Hsun-Hsien
  Authors: Hsun-Hsien Chang
  Manuscript Type: Paper
  Page: 20
  Conference Title: TBI
• Translational Systems Genomics: Ontology and Imaging Chen, Su-shing Translational Systems Genomics: Ontology and Imaging
  Year: 2009
  Authors: Chen, Su-shing
  Authors: Su-shing Chen
  Manuscript Type: Paper
  Page: 21
  Conference Title: TBI
• Agent Based Modeling Supporting the Migration of Registry Systems to Grid Based Architectures Cryer, Martin Agent Based Modeling Supporting the Migration of Registry Systems to Grid Based Architectures
  Year: 2009
  Authors: Cryer, Martin
  Authors: Martin Cryer
  Manuscript Type: Paper
  Page: 26
  Conference Title: TBI
• A systems biology approach to the identification and analysis of transcriptional regulatory networks in osteocytes * Dean, Angela A systems biology approach to the identification and analysis of transcriptional regulatory networks in osteocytes *
  Year: 2009
  Authors: Dean, Angela
  Authors: Angela Dean
  Manuscript Type: Paper
  Page: 31
  Conference Title: TBI
• Natural Language Query in the Biochemistry and Molecular Biology Domains Based on Cognition Search™ Goldsmith, Elizabeth Natural Language Query in the Biochemistry and Molecular Biology Domains Based on Cognition Search™
  Year: 2009
  Authors: Goldsmith, Elizabeth
  Authors: Elizabeth Goldsmith
  Manuscript Type: Paper
  Page: 32
  Conference Title: TBI
• Infection in the Intensive Care Unit Alters Physiological Networks * Grossman, Adam Infection in the Intensive Care Unit Alters Physiological Networks *
  Year: 2009
  Authors: Grossman, Adam
  Authors: Adam Grossman
  Manuscript Type: Paper
  Page: 38
  Conference Title: TBI
• Composite Patient Reports: A Laboratory Informatics Perspective and Pilot Project for Personalized Medicine and Translational Research Gundlapalli, Adi Composite Patient Reports: A Laboratory Informatics Perspective and Pilot Project for Personalized Medicine and Translational Research
  Year: 2009
  Authors: Gundlapalli, Adi
  Authors: Adi Gundlapalli
  Manuscript Type: Paper
  Page: 39
  Conference Title: TBI
• Adoption and Adaptation of caGrid for CTSA Hastings, Shannon Adoption and Adaptation of caGrid for CTSA
  Year: 2009
  Authors: Hastings, Shannon
  Authors: Shannon Hastings
  Manuscript Type: Paper
  Page: 44
  Conference Title: TBI
• Comorbidity of Bipolar Disorder with Substance Abuse: Selection of Prioritized Genes for Translational Research Isokpehi, Raphael Comorbidity of Bipolar Disorder with Substance Abuse: Selection of Prioritized Genes for Translational Research
  Year: 2009
  Authors: Isokpehi, Raphael
  Authors: Raphael Isokpehi
  Manuscript Type: Paper
  Page: 49
  Conference Title: TBI
• PAPAyA: A Platform for Breast Cancer Biomarker Signature Discovery and Evaluation and Assessment * Janevski, Angel PAPAyA: A Platform for Breast Cancer Biomarker Signature Discovery and Evaluation and Assessment *
  Year: 2009
  Authors: Janevski, Angel
  Authors: Angel Janevski
  Manuscript Type: Paper
  Page: 54
  Conference Title: TBI
• Feature Selection for fMRI-based Deception Detection * Jin, Bo Feature Selection for fMRI-based Deception Detection *
  Year: 2009
  Authors: Jin, Bo
  Authors: Bo Jin
  Manuscript Type: Paper
  Page: 55
  Conference Title: TBI
• The Open Biomedical Annotator Jonquet, Clement The Open Biomedical Annotator
  Year: 2009
  Authors: Jonquet, Clement
  Authors: Clement Jonquet
  Manuscript Type: Paper
  Page: 56
  Conference Title: TBI
• Mining to find the lipid interaction networks involved in Ovarian Cancers Kanagasabai, Rajaraman Mining to find the lipid interaction networks involved in Ovarian Cancers
  Year: 2009
  Authors: Kanagasabai, Rajaraman
  Authors: Rajaraman Kanagasabai
  Manuscript Type: Paper
  Page: 61
  Conference Title: TBI
• Evaluation of a Large-Scale Biomedical Data Annotation Initiative * Lacson, Ronilda Evaluation of a Large-Scale Biomedical Data Annotation Initiative *
  Year: 2009
  Authors: Lacson, Ronilda
  Authors: Ronilda Lacson
  Manuscript Type: Paper
  Page: 66
  Conference Title: TBI
• Analysis of AML Genes in Dysregulated Molecular Interaction Networks * Lee, Eunjung Analysis of AML Genes in Dysregulated Molecular Interaction Networks *
  Year: 2009
  Authors: Lee, Eunjung
  Authors: Eunjung Lee
  Manuscript Type: Paper
  Page: 67
  Conference Title: TBI
• A Controlled Vocabulary to Represent Sonographic Features of the Thyroid and its application in a Bayesian Network to Predict Thyroid Nodule Malignancy Liu, Yueyi A Controlled Vocabulary to Represent Sonographic Features of the Thyroid and its application in a Bayesian Network to Predict Thyroid Nodule Malignancy
  Year: 2009
  Authors: Liu, Yueyi
  Authors: Yueyi Liu
  Manuscript Type: Paper
  Page: 68
  Conference Title: TBI
• Knowledge Based Variable Selection for Rule Learning on Proteomic Data * Lustgarten, Jonathan Knowledge Based Variable Selection for Rule Learning on Proteomic Data *
  Year: 2009
  Authors: Lustgarten, Jonathan
  Authors: Jonathan Lustgarten
  Manuscript Type: Paper
  Page: 73
  Conference Title: TBI
• Multi-Criteria Decision Making Approaches for Quality Control of Genome-Wide Association Studies Malovini, Alberto Multi-Criteria Decision Making Approaches for Quality Control of Genome-Wide Association Studies
  Year: 2009
  Authors: Malovini, Alberto
  Authors: Alberto Malovini
  Manuscript Type: Paper
  Page: 74
  Conference Title: TBI
• Integrating Automated Workflows, Human Intelligence and Collaboration Mirel, Barbara Integrating Automated Workflows, Human Intelligence and Collaboration
  Year: 2009
  Authors: Mirel, Barbara
  Authors: Barbara Mirel
  Manuscript Type: Paper
  Page: 79
  Conference Title: TBI
• The Potential for Automated Question Answering in the Context of Genomic Medicine: An Assessment of Existing Resources and Properties of Answers * Overby, Casey The Potential for Automated Question Answering in the Context of Genomic Medicine: An Assessment of Existing Resources and Properties of Answers *
  Year: 2009
  Authors: Overby, Casey
  Authors: Casey Overby
  Manuscript Type: Paper
  Page: 84
  Conference Title: TBI
• Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes Pantazatos, Spiro Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes
  Year: 2009
  Authors: Pantazatos, Spiro
  Authors: Spiro Pantazatos
  Manuscript Type: Paper
  Page: 85
  Conference Title: TBI
• PubAtlas: literature mapping with a "BLAST interface" for PubMed Parker, Douglass PubAtlas: literature mapping with a "BLAST interface" for PubMed
  Year: 2009
  Authors: Parker, Douglass
  Authors: Douglass Parker
  Manuscript Type: Paper
  Page: 90
  Conference Title: TBI
• Conceptual Dissonance: Evaluating the Efficacy of Natural Language Processing Techniques for Validating Translational Knowledge Constructs Payne, Philip Conceptual Dissonance: Evaluating the Efficacy of Natural Language Processing Techniques for Validating Translational Knowledge Constructs
  Year: 2009
  Authors: Payne, Philip
  Authors: Philip Payne
  Manuscript Type: Paper
  Page: 95
  Conference Title: TBI
• A Comparative Study of Metabolic Network Topology between a Pathogenic and a Non-Pathogenic Bacterium for Potential Drug Target Identification Perumal, Deepak A Comparative Study of Metabolic Network Topology between a Pathogenic and a Non-Pathogenic Bacterium for Potential Drug Target Identification
  Year: 2009
  Authors: Perumal, Deepak
  Authors: Deepak Perumal
  Manuscript Type: Paper
  Page: 100
  Conference Title: TBI
• Towards Large-Scale Sample Annotation in Gene Expression Repositories * Pitzer, Erik Towards Large-Scale Sample Annotation in Gene Expression Repositories *
  Year: 2009
  Authors: Pitzer, Erik
  Authors: Erik Pitzer
  Manuscript Type: Paper
  Page: 105
  Conference Title: TBI
• A Semantic Image Annotation Model to Enable Integrative Translational Research Rubin, Daniel A Semantic Image Annotation Model to Enable Integrative Translational Research
  Year: 2009
  Authors: Rubin, Daniel
  Authors: Daniel Rubin
  Manuscript Type: Paper
  Page: 106
  Conference Title: TBI
• Modeling and characterization of disease associated subnetworks in the human interactome using machine learning Sam, Lee Modeling and characterization of disease associated subnetworks in the human interactome using machine learning
  Year: 2009
  Authors: Sam, Lee
  Authors: Lee Sam
  Manuscript Type: Paper
  Page: 111
  Conference Title: TBI
• Towards Interoperable Reporting Standards for Omics Data - Hopes and Hurdles Sansone, Susanna Towards Interoperable Reporting Standards for Omics Data - Hopes and Hurdles
  Year: 2009
  Authors: Sansone, Susanna
  Authors: Susanna Sansone
  Manuscript Type: Paper
  Page: 112
  Conference Title: TBI
• Toward an Ontological Treatment of Disease and Diagnosis Scheuermann, Richard Toward an Ontological Treatment of Disease and Diagnosis
  Year: 2009
  Authors: Scheuermann, Richard
  Authors: Richard Scheuermann
  Manuscript Type: Paper
  Page: 116
  Conference Title: TBI
• Evaluating the Accuracy of SNPit: a Functional SNP Annotation System * Shen, Terry Evaluating the Accuracy of SNPit: a Functional SNP Annotation System *
  Year: 2009
  Authors: Shen, Terry
  Authors: Terry Shen
  Manuscript Type: Paper
  Page: 121
  Conference Title: TBI
• Structural Similarity Assessment for Drug Sensitivity Prediction in Cancer * Shivakumar, Pavithra Structural Similarity Assessment for Drug Sensitivity Prediction in Cancer *
  Year: 2009
  Authors: Shivakumar, Pavithra
  Authors: Pavithra Shivakumar
  Manuscript Type: Paper
  Page: 122
  Conference Title: TBI
• Applying Annotation Methods to Electronic Clinical Documents to Identify Phenotypic Information: Where Should We Start the Search? * South, Brett Applying Annotation Methods to Electronic Clinical Documents to Identify Phenotypic Information: Where Should We Start the Search? *
  Year: 2009
  Authors: South, Brett
  Authors: Brett South
  Manuscript Type: Paper
  Page: 123
  Conference Title: TBI
• Extraction of Conditional Probabilities of the Relationships between Drugs, Diseases, and Genes from PubMed guided by relationships in PharmGKB Theobald, Martin Extraction of Conditional Probabilities of the Relationships between Drugs, Diseases, and Genes from PubMed guided by relationships in PharmGKB
  Year: 2009
  Authors: Theobald, Martin
  Authors: Martin Theobald
  Manuscript Type: Paper
  Page: 124
  Conference Title: TBI
• Consistent visualizations of changing knowledge Tipney, Hannah Consistent visualizations of changing knowledge
  Year: 2009
  Authors: Tipney, Hannah
  Authors: Hannah Tipney
  Manuscript Type: Paper
  Page: 129
  Conference Title: TBI
• Bayesian Combinatorial Partitioning For Detecting Interactions Among Genetic Variants Visweswaran, Shyam Bayesian Combinatorial Partitioning For Detecting Interactions Among Genetic Variants
  Year: 2009
  Authors: Visweswaran, Shyam
  Authors: Shyam Visweswaran
  Manuscript Type: Paper
  Page: 133
  Conference Title: TBI
• Characterizing Environmental and Phenotypic Associations using Information Theory and Electronic Health Records * Wang, Xiaoyan Characterizing Environmental and Phenotypic Associations using Information Theory and Electronic Health Records *
  Year: 2009
  Authors: Wang, Xiaoyan
  Authors: Xiaoyan Wang
  Manuscript Type: Paper
  Page: 134
  Conference Title: TBI
• Ontology Based Clinical Query Extraction Wennerberg, Pinar Ontology Based Clinical Query Extraction
  Year: 2009
  Authors: Wennerberg, Pinar
  Authors: Pinar Wennerberg
  Manuscript Type: Paper
  Page: 135
  Conference Title: TBI
• Using Personal Health Records for Automated Clinical Trials Recruitment: the ePaIRing Model Wilcox, Adam Using Personal Health Records for Automated Clinical Trials Recruitment: the ePaIRing Model
  Year: 2009
  Authors: Wilcox, Adam
  Authors: Adam Wilcox
  Manuscript Type: Paper
  Page: 136
  Conference Title: TBI
• Pattern Discovery in Breast Cancer Specific Protein Interaction Network Wu, Xiaogang Pattern Discovery in Breast Cancer Specific Protein Interaction Network
  Year: 2009
  Authors: Wu, Xiaogang
  Authors: Xiaogang Wu
  Manuscript Type: Paper
  Page: 141
  Conference Title: TBI
• PGnet: A Novel Method for Predicting Epigenetic Regulatory Networks in Gene Expression Arrays of Acute Lymphoblastic Leukemia * Yang, Xinan PGnet: A Novel Method for Predicting Epigenetic Regulatory Networks in Gene Expression Arrays of Acute Lymphoblastic Leukemia *
  Year: 2009
  Authors: Yang, Xinan
  Authors: Xinan Yang
  Manuscript Type: Paper
  Page: 142
  Conference Title: TBI
• Using the Weighted Keyword Model to Improve Information Retrieval for Answering Biomedical Questions Yu, Hong Using the Weighted Keyword Model to Improve Information Retrieval for Answering Biomedical Questions
  Year: 2009
  Authors: Yu, Hong
  Authors: Hong Yu
  Manuscript Type: Paper
  Page: 143
  Conference Title: TBI
• A Hybrid System Design Approach to Enable Translational Research Alaoui, Adil A Hybrid System Design Approach to Enable Translational Research
  Year: 2009
  Authors: Alaoui, Adil
  Authors: Adil Alaoui
  Manuscript Type: Poster
  Page: 148
  Conference Title: TBI
• A Sophisticated Analysis Toolkit for Translational Oncology Xenograft Studies Alicke, Bruno A Sophisticated Analysis Toolkit for Translational Oncology Xenograft Studies
  Year: 2009
  Authors: Alicke, Bruno
  Authors: Bruno Alicke
  Manuscript Type: Poster
  Page: 149
  Conference Title: TBI
• Introduction of an Agent-based Framework for Ontology Integration: A Step in the Evolution of Executable Knowledge Representation An, Gary Introduction of an Agent-based Framework for Ontology Integration: A Step in the Evolution of Executable Knowledge Representation
  Year: 2009
  Authors: An, Gary
  Authors: Gary An
  Manuscript Type: Poster
  Page: 150
  Conference Title: TBI
• Towards a Policy Framework for Supporting Inter-institutional Biorepository Data Sharing Anderson, Nicholas Towards a Policy Framework for Supporting Inter-institutional Biorepository Data Sharing
  Year: 2009
  Authors: Anderson, Nicholas
  Authors: Nicholas Anderson
  Manuscript Type: Poster
  Page: 151
  Conference Title: TBI
• Bioinformatic Quantification of Noggin Inhibition of Osteogenic BMPs Balch, Karl Bioinformatic Quantification of Noggin Inhibition of Osteogenic BMPs
  Year: 2009
  Authors: Balch, Karl
  Authors: Karl Balch
  Manuscript Type: Poster
  Page: 152
  Conference Title: TBI
• Anvita eReference: Biomedical Knowledge Representation Integrating Science and Medicine. Ball, Sheldon Anvita eReference: Biomedical Knowledge Representation Integrating Science and Medicine.
  Year: 2009
  Authors: Ball, Sheldon
  Authors: Sheldon Ball
  Manuscript Type: Poster
  Page: 153
  Conference Title: TBI
• Clustering the Interacting Molecular and Clinical Atherosclerosis Risk Factors using Principal Components Analysis Chan, Lawrence Clustering the Interacting Molecular and Clinical Atherosclerosis Risk Factors using Principal Components Analysis
  Year: 2009
  Authors: Chan, Lawrence
  Authors: Lawrence Chan
  Manuscript Type: Poster
  Page: 154
  Conference Title: TBI
• Resolving Terminology Issues for a Clinical Research Data Warehouse Cimino, James Resolving Terminology Issues for a Clinical Research Data Warehouse
  Year: 2009
  Authors: Cimino, James
  Authors: James Cimino
  Manuscript Type: Poster
  Page: 155
  Conference Title: TBI
• GeneSubspace – A Tool for Clustering the Gene Expression Profiles Using Mixture Linear Models (Poster) Cooper, Lee GeneSubspace – A Tool for Clustering the Gene Expression Profiles Using Mixture Linear Models (Poster)
  Year: 2009
  Authors: Cooper, Lee
  Authors: Lee Cooper
  Manuscript Type: Poster
  Page: 156
  Conference Title: TBI
• Personalized medical practice with guidelines of the Food and Drug Administration and the National Institutes of Health Devineni, Kishore Sree Phani Personalized medical practice with guidelines of the Food and Drug Administration and the National Institutes of Health
  Year: 2009
  Authors: Devineni, Kishore Sree Phani
  Authors: Sree Phani Kishore Devineni
  Manuscript Type: Poster
  Page: 157
  Conference Title: TBI
• A Visual Environment for Complex Computational Workflow Design for Molecular Biologists Fursov, Mikhail A Visual Environment for Complex Computational Workflow Design for Molecular Biologists
  Year: 2009
  Authors: Fursov, Mikhail
  Authors: Mikhail Fursov
  Manuscript Type: Poster
  Page: 158
  Conference Title: TBI
• Natural Language Query in the Biochemistry and Molecular Biology Domains Based on Cognition Search™ Goldsmith, Elizabeth Natural Language Query in the Biochemistry and Molecular Biology Domains Based on Cognition Search™
  Year: 2009
  Authors: Goldsmith, Elizabeth
  Authors: Elizabeth Goldsmith
  Manuscript Type: Poster
  Page: 159
  Conference Title: TBI
• PhenX: Consensus Measures to Facilitate Cross-Study Analyses for Genome-wide Association Studies Hamilton, Carol PhenX: Consensus Measures to Facilitate Cross-Study Analyses for Genome-wide Association Studies
  Year: 2009
  Authors: Hamilton, Carol
  Authors: Carol Hamilton
  Manuscript Type: Poster
  Page: 160
  Conference Title: TBI
• GenomeScape: A Universal 3D Visualization Tool for Genomic Data (Poster) Huang, Kun GenomeScape: A Universal 3D Visualization Tool for Genomic Data (Poster)
  Year: 2009
  Authors: Huang, Kun
  Authors: Kun Huang
  Manuscript Type: Poster
  Page: 161
  Conference Title: TBI
• Detection of Multiple-way Epistatic Gene Effects in Affected Sibling Pairs Hulet, Jordan Detection of Multiple-way Epistatic Gene Effects in Affected Sibling Pairs
  Year: 2009
  Authors: Hulet, Jordan
  Authors: Jordan Hulet
  Manuscript Type: Poster
  Page: 162
  Conference Title: TBI
• Building the Missing Link: Tissue and Clinical Data Integration Kamal, Jyoti Building the Missing Link: Tissue and Clinical Data Integration
  Year: 2009
  Authors: Kamal, Jyoti
  Authors: Jyoti Kamal
  Manuscript Type: Poster
  Page: 163
  Conference Title: TBI
• Bioinformatics framework for the analysis and interpretation of metabolomic data Karnovsky, Alla Bioinformatics framework for the analysis and interpretation of metabolomic data
  Year: 2009
  Authors: Karnovsky, Alla
  Authors: Alla Karnovsky
  Manuscript Type: Poster
  Page: 164
  Conference Title: TBI
• Compositional Data Mining of Complex Genetic Disease Data Keller, Benjamin Compositional Data Mining of Complex Genetic Disease Data
  Year: 2009
  Authors: Keller, Benjamin
  Authors: Benjamin Keller
  Manuscript Type: Poster
  Page: 165
  Conference Title: TBI
• Security Frameworks Protecting Clinical Data Keller, Michael Security Frameworks Protecting Clinical Data
  Year: 2009
  Authors: Keller, Michael
  Authors: Michael Keller
  Manuscript Type: Poster
  Page: 166
  Conference Title: TBI
• Deploying the cancer Biomedical Informatics Grid (caBIG®): Taking more than a village to build a network Keller, Michael Deploying the cancer Biomedical Informatics Grid (caBIG®): Taking more than a village to build a network
  Year: 2009
  Authors: Keller, Michael
  Authors: Michael Keller
  Manuscript Type: Poster
  Page: 167
  Conference Title: TBI
• Genome Data into Cloned Whole Clinical Database Kimura, Michio Genome Data into Cloned Whole Clinical Database
  Year: 2009
  Authors: Kimura, Michio
  Authors: Michio Kimura
  Manuscript Type: Poster
  Page: 168
  Conference Title: TBI
• The National Cancer Institute’s Cancer Biomedical Informatics Grid® (caBIG®): Open Source Tools to Facilitate Integrative Cancer Research Klemm, Juli The National Cancer Institute’s Cancer Biomedical Informatics Grid® (caBIG®): Open Source Tools to Facilitate Integrative Cancer Research
  Year: 2009
  Authors: Klemm, Juli
  Authors: Juli Klemm
  Manuscript Type: Poster
  Page: 169
  Conference Title: TBI
• Ontology-Based eXtensible Data Model (OBX) Kong, Megan Ontology-Based eXtensible Data Model (OBX)
  Year: 2009
  Authors: Kong, Megan
  Authors: Megan Kong
  Manuscript Type: Poster
  Page: 170
  Conference Title: TBI
• Assembly and Visualization of Lymphoblast Transcriptome Kramer, Robin Assembly and Visualization of Lymphoblast Transcriptome
  Year: 2009
  Authors: Kramer, Robin
  Authors: Robin Kramer
  Manuscript Type: Poster
  Page: 171
  Conference Title: TBI
• An OWL-based Virtual Medical Record to Support Translational Research Lee, Wei-Nchih An OWL-based Virtual Medical Record to Support Translational Research
  Year: 2009
  Authors: Lee, Wei-Nchih
  Authors: Wei-Nchih Lee
  Manuscript Type: Poster
  Page: 172
  Conference Title: TBI
• Using Patient’s Clinical Characteristics To Examine Functional Patterns In Regulatory Pathways Ma, Kelvin Using Patient’s Clinical Characteristics To Examine Functional Patterns In Regulatory Pathways
  Year: 2009
  Authors: Ma, Kelvin
  Authors: Kelvin Ma
  Manuscript Type: Poster
  Page: 174
  Conference Title: TBI
• Catalyst Portal Architecture for Accelerating Translational Research MacFadden, Douglas Catalyst Portal Architecture for Accelerating Translational Research
  Year: 2009
  Authors: MacFadden, Douglas
  Authors: Douglas MacFadden
  Manuscript Type: Poster
  Page: 175
  Conference Title: TBI
• An Ontology-Driven Bleeding History Phenotyping System to Pool Data Across Sites Mauer, Andreas An Ontology-Driven Bleeding History Phenotyping System to Pool Data Across Sites
  Year: 2009
  Authors: Mauer, Andreas
  Authors: Andreas Mauer
  Manuscript Type: Poster
  Page: 176
  Conference Title: TBI
• Design of Integrated Translational Bioinformatics Systems Mirel, Barbara Design of Integrated Translational Bioinformatics Systems
  Year: 2009
  Authors: Mirel, Barbara
  Authors: Barbara Mirel
  Manuscript Type: Poster
  Page: 177
  Conference Title: TBI
• Pattern Landscape of the Human Genome Mitchell, Asia Pattern Landscape of the Human Genome
  Year: 2009
  Authors: Mitchell, Asia
  Authors: Asia Mitchell
  Manuscript Type: Poster
  Page: 178
  Conference Title: TBI
• The ABC and Ps of Biomedical and Translational Research, Workflow Designs and the Case for an Integrated Data Repository Mobed, Ketty The ABC and Ps of Biomedical and Translational Research, Workflow Designs and the Case for an Integrated Data Repository
  Year: 2009
  Authors: Mobed, Ketty
  Authors: Ketty Mobed
  Manuscript Type: Poster
  Page: 179
  Conference Title: TBI
• The Integrated Data Repository: Ontology Mapping and Data Discovery for the Translational Investigator Mobed, Ketty The Integrated Data Repository: Ontology Mapping and Data Discovery for the Translational Investigator
  Year: 2009
  Authors: Mobed, Ketty
  Authors: Ketty Mobed
  Manuscript Type: Poster
  Page: 180
  Conference Title: TBI
• Statistical N-gram Modeling of Genomes for Pattern Discovery Mohamed, Thahir Statistical N-gram Modeling of Genomes for Pattern Discovery
  Year: 2009
  Authors: Mohamed, Thahir
  Authors: Thahir Mohamed
  Manuscript Type: Poster
  Page: 181
  Conference Title: TBI
• Accelerating Translation Research with a Comprehensive Informatics Solution that Connects Discovery and Clinical Data Mural, Richard Accelerating Translation Research with a Comprehensive Informatics Solution that Connects Discovery and Clinical Data
  Year: 2009
  Authors: Mural, Richard
  Authors: Richard Mural
  Manuscript Type: Poster
  Page: 182
  Conference Title: TBI
• Towards an Epistemological Model for Automated Reasoning Systems in Genome-wide Studies Nuzzo, Angelo Towards an Epistemological Model for Automated Reasoning Systems in Genome-wide Studies
  Year: 2009
  Authors: Nuzzo, Angelo
  Authors: Angelo Nuzzo
  Manuscript Type: Poster
  Page: 183
  Conference Title: TBI
• Combined Computational-Experimental Analyses of Selected Metabolic Enzymes in Pseudomonas Species Perumal, Deepak Combined Computational-Experimental Analyses of Selected Metabolic Enzymes in Pseudomonas Species
  Year: 2009
  Authors: Perumal, Deepak
  Authors: Deepak Perumal
  Manuscript Type: Poster
  Page: 184
  Conference Title: TBI
• Enterprise-wide Repurposing and Distribution of Medical Record Data Through the i2b2 Software Hive Phillips, Lori Enterprise-wide Repurposing and Distribution of Medical Record Data Through the i2b2 Software Hive
  Year: 2009
  Authors: Phillips, Lori
  Authors: Lori Phillips
  Manuscript Type: Poster
  Page: 185
  Conference Title: TBI
• Model of Glioblastoma Multiforme Survival Using Clinical and Somatic Mutation Data Piccolo, Stephen Model of Glioblastoma Multiforme Survival Using Clinical and Somatic Mutation Data
  Year: 2009
  Authors: Piccolo, Stephen
  Authors: Stephen Piccolo
  Manuscript Type: Poster
  Page: 186
  Conference Title: TBI
• Optical Character Recognition for Phenotyping Cataract Types Rasmussen, Luke Optical Character Recognition for Phenotyping Cataract Types
  Year: 2009
  Authors: Rasmussen, Luke
  Authors: Luke Rasmussen
  Manuscript Type: Poster
  Page: 187
  Conference Title: TBI
• Implementing Metadata Standards in Public Health Information Systems Reid, Jon Implementing Metadata Standards in Public Health Information Systems
  Year: 2009
  Authors: Reid, Jon
  Authors: Jon Reid
  Manuscript Type: Poster
  Page: 188
  Conference Title: TBI
• BioInvestigation Index – Standards and Infrastructure for Omics Data at EBI Rocca-Serra, Philippe BioInvestigation Index – Standards and Infrastructure for Omics Data at EBI
  Year: 2009
  Authors: Rocca-Serra, Philippe
  Authors: Philippe Rocca-Serra
  Manuscript Type: Poster
  Page: 189
  Conference Title: TBI
• Knowledge generation using informed Bioinformatic workflows for genome wide association hits: functional discovery and clinical relevance. Ross, David Knowledge generation using informed Bioinformatic workflows for genome wide association hits: functional discovery and clinical relevance.
  Year: 2009
  Authors: Ross, David
  Authors: David Ross
  Manuscript Type: Poster
  Page: 190
  Conference Title: TBI
• Understanding and accounting for dependence in microarray gene expression data Sinha, Anshu Understanding and accounting for dependence in microarray gene expression data
  Year: 2009
  Authors: Sinha, Anshu
  Authors: Anshu Sinha
  Manuscript Type: Poster
  Page: 191
  Conference Title: TBI
• Implementation of Prototype Biomedical Registries for PORTAL-DOORS Taswell, Carl Implementation of Prototype Biomedical Registries for PORTAL-DOORS
  Year: 2009
  Authors: Taswell, Carl
  Authors: Carl Taswell
  Manuscript Type: Poster
  Page: 192
  Conference Title: TBI
• Patient Discovery with Clinical Specialty Ontologies Tonellato, Peter Patient Discovery with Clinical Specialty Ontologies
  Year: 2009
  Authors: Tonellato, Peter
  Authors: Peter Tonellato
  Manuscript Type: Poster
  Page: 193
  Conference Title: TBI
• Finding Temporal Gene Expression Profiles for Exploratory Translational Analysis Tusch, Guenter Finding Temporal Gene Expression Profiles for Exploratory Translational Analysis
  Year: 2009
  Authors: Tusch, Guenter
  Authors: Guenter Tusch
  Manuscript Type: Poster
  Page: 194
  Conference Title: TBI
• Genomic-Scale Screening for Gene Fusions in Human Solid Tumors by Integrative Biomedical Informatics wang, xiaosong Genomic-Scale Screening for Gene Fusions in Human Solid Tumors by Integrative Biomedical Informatics
  Year: 2009
  Authors: wang, xiaosong
  Authors: xiaosong wang
  Manuscript Type: Poster
  Page: 195
  Conference Title: TBI
• The Shared Health Research Information Network (SHRINE): A Prototype Federated Query Tool for Clinical and Translational Data Repositories Weber, Griffin The Shared Health Research Information Network (SHRINE): A Prototype Federated Query Tool for Clinical and Translational Data Repositories
  Year: 2009
  Authors: Weber, Griffin
  Authors: Griffin Weber
  Manuscript Type: Poster
  Page: 196
  Conference Title: TBI
• A Phenome-Wide Association Study Through Secondary Uses of Clinical and Research Data Weng, Chunhua A Phenome-Wide Association Study Through Secondary Uses of Clinical and Research Data
  Year: 2009
  Authors: Weng, Chunhua
  Authors: Chunhua Weng
  Manuscript Type: Poster
  Page: 197
  Conference Title: TBI
• A web-based system for automated identification and reporting of common clinical serotypes of Salmonella enterica utilizing multiplex PCR amplification patterns. Yi, Qian A web-based system for automated identification and reporting of common clinical serotypes of Salmonella enterica utilizing multiplex PCR amplification patterns.
  Year: 2009
  Authors: Yi, Qian
  Authors: Qian Yi
  Manuscript Type: Poster
  Page: 198
  Conference Title: TBI